Update: A few weeks after this thread started mine quit leaking, hasn't left a spot on the garage floor in about a year now. I was around 5k at the time and I'm at 11k now. My guess is that the seals just needed more breaking in.
The water pump most likely uses a ceramic or other hard surfaced seal. It's just what you've been told, a bike that sits for a long time will develop sealing issues, usually from crystallization on the seal.
Oftentimes the seal will "reface" itself after a time. But a slight leakage like this is not usually a cause for concern. Just keep an eye on your coolant level.
Bikes that sit for long periods of time are going to have various problems like this. It's also very bad for the brake system, fuel system, and suspension (fork seals in particular).