While not a Yamaha, the clutch on my previous bike (Buell Blast - basically a '99 Harley Sportster with half the engine lopped off) had to be replaced at 3,000 miles (shift detent plate retainer clip broke, got shredded, and introduced into the clutch... PoS).
I chose to use an aftermarket kit with a 20% stiffer spring and with 20% more friction area on the fiber rings. The kit was marketed as a racer kit, but I chose it for price (cost less than stock and included the spring compression tool). The difference in clutch feel was night and day - the friction zone was much increased and more linear. I was expecting a clunkier, nastier clutch, and was very pleased and surprised by the effect.
If going to stiffer springs on the Yamaha causes a similar effect, it might be worth looking into. Do keep us updated as it wears!